Bilgisayar Mühendisliği Bölümü Yayın Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12416/253
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Conference Object Citation - Scopus: 1Lung Inflammatory Classification of Diseases Using X-Ray Images(Institute of Electrical and Electronics Engineers Inc., 2021) Mohanned, H.H.; Sürücü, S.; Choupani, R.Recently, studies in inflammatory diseases categorization become of interest in the research community, especially with the sudden outbreak of the Covid-19 virus. Transfer learning proved to be the state-of-the-art when it comes to image classification problems, or related tasks. These methods achieve good results in this type of applications. Lately, this pre-trained embedding became even popular due to X-ray related studies for early Covid-19 diagnosis. In this study, we investigate the X-ray image classification problem using the transfer learning method. We fine-tuned and trained our model using pre-trained models such as AlexNet, VGG16, DenseNet etc, and a baseline deep neural network. We then evaluated this model in terms of classification evaluation metrics. The study shows that DenseNet achieves high accuracy compared to the other pre-trained and baseline CNN models. © 2021 IEEEArticle Citation - WoS: 43Citation - Scopus: 50Detection of Hip Osteoarthritis by Using Plain Pelvic Radiographs With Deep Learning Methods(Springer, 2020) Ureten, Kemal; Arslan, Tayfun; Gultekin, Korcan Emre; Demir, Ayse Nur Demirgoz; Ozer, Hafsa Feyza; Bilgili, YaseminObjective The incidence of osteoarthritis is gradually increasing in public due to aging and increase in obesity. Various imaging methods are used in the diagnosis of hip osteoarthritis, and plain pelvic radiography is the first preferred imaging method in the diagnosis of hip osteoarthritis. In this study, we aimed to develop a computer-aided diagnosis method that will help physicians for the diagnosis of hip osteoarthritis by interpreting plain pelvic radiographs. Materials and methods In this retrospective study, convolutional neural networks were used and transfer learning was applied with the pre-trained VGG-16 network. Our dataset consisted of 221 normal hip radiographs and 213 hip radiographs with osteoarthritis. In this study, the training of the network was performed using a total of 426 hip osteoarthritis images and a total of 442 normal pelvic images obtained by flipping the raw data set. Results Training results were evaluated with performance metrics such as accuracy, sensitivity, specificity, and precision calculated by using the confusion matrix. We achieved accuracy, sensitivity, specificity and precision results at 90.2%, 97.6%, 83.0%, and 84.7% respectively. Conclusion We achieved promising results with this computer-aided diagnosis method that we tried to develop using convolutional neural networks based on transfer learning. This method can help clinicians for the diagnosis of hip osteoarthritis while interpreting plain pelvic radiographs, also provides assistance for a second objective interpretation. It may also reduce the need for advanced imaging methods in the diagnosis of hip osteoarthritis.Article Citation - WoS: 13Citation - Scopus: 15The Diagnosis of Developmental Dysplasia of the Hip From Hip Ultrasonography Images With Deep Learning Methods(Lippincott Williams & Wilkins, 2023) Ureten, Kemal; Tokdemir, Gul; Tolunay, Tolga; Ciceklidag, Murat; Atik, Osman Sahap; Atalar, HakanBackground:Hip ultrasonography is very important in the early diagnosis of developmental dysplasia of the hip. The application of deep learning-based medical image analysis to computer-aided diagnosis has the potential to provide decision-making support to clinicians and improve the accuracy and efficiency of various diagnostic and treatment processes. This has encouraged new research and development efforts in computer-aided diagnosis. The aim of this study was to evaluate hip sonograms using computer-assisted deep-learning methods. Methods:The study included 376 sonograms evaluated as normal according to the Graf method, 541 images with dysplasia and 365 images with incorrect probe position. To classify the developmental hip dysplasia ultrasound images, transfer learning was applied with pretrained VGG-16, ResNet-101, MobileNetV2 and GoogLeNet networks. The performances of the networks were evaluated with the performance parameters of accuracy, sensitivity, specificity, precision, F1 score, and AUC (area under the ROC curve). Results:The accuracy, sensitivity, specificity, precision, F1 score, and AUC results obtained by testing the VGG-16, ResNet-101, MobileNetV2, and GoogLeNet models showed performance >80%. With the pretrained VGG-19 model, 93%, 93.5%, 96.7%, 92.3%, 92.6%, and 0.99 accuracy, sensitivity, specificity, precision, F1 score, and AUC results were obtained, respectively. Conclusion:In this study, in addition to the ultrasonography images of dysplastic and healthy hips, images were also included of probe malpositioning, and these images were able to be successfully evaluated with deep learning methods. On the sonograms, which provided criteria appropriate for evaluation, successful differentiation could be made of healthy hips and dysplastic hips.Article Citation - WoS: 22Citation - Scopus: 25Deep Learning Methods in the Diagnosis of Sacroiliitis From Plain Pelvic Radiographs(Oxford Univ Press, 2023) Ureten, Kemal; Maras, Yuksel; Duran, Semra; Gok, KevserObjectives The aim of this study is to develop a computer-aided diagnosis method to assist physicians in evaluating sacroiliac radiographs. Methods Convolutional neural networks, a deep learning method, were used in this retrospective study. Transfer learning was implemented with pre-trained VGG-16, ResNet-101 and Inception-v3 networks. Normal pelvic radiographs (n = 290) and pelvic radiographs with sacroiliitis (n = 295) were used for the training of networks. Results The training results were evaluated with the criteria of accuracy, sensitivity, specificity and precision calculated from the confusion matrix and AUC (area under the ROC curve) calculated from ROC (receiver operating characteristic) curve. Pre-trained VGG-16 model revealed accuracy, sensitivity, specificity, precision and AUC figures of 89.9%, 90.9%, 88.9%, 88.9% and 0.96 with test images, respectively. These results were 84.3%, 91.9%, 78.8%, 75.6 and 0.92 with pre-trained ResNet-101, and 82.0%, 79.6%, 85.0%, 86.7% and 0.90 with pre-trained inception-v3, respectively. Conclusions Successful results were obtained with all three models in this study where transfer learning was applied with pre-trained VGG-16, ResNet-101 and Inception-v3 networks. This method can assist clinicians in the diagnosis of sacroiliitis, provide them with a second objective interpretation and also reduce the need for advanced imaging methods such as magnetic resonance imaging.Article Citation - Scopus: 2Automatic Detection of Spina Bifida Occulta With Deep Learning Methods From Plain Pelvic Radiographs(Springer Science and Business Media Deutschland GmbH, 2023) Üreten, K.; Maraş, Y.; Maraş, H.H.; Gök, K.; Atalar, E.; Çayhan, V.; Duran, S.Purpose: Spina bifida occulta (SBO), which is the most common congenital spinal deformity, is often seen in the lower lumbar spine and sacrum. In this study, it is aimed to develop a computer-aided diagnosis method that will help clinicians in the diagnosis of spina bifida occulta from plain pelvic radiographs with deep learning methods and transfer learning method. Materials and methods: The You Only Look Once (YOLO) algorithm was used for object detection, and classification was made by applying transfer learning with a pre-trained VGG-19, ResNet-101, MobileNetV2, and GoogLeNet networks. Our dataset consisted of 206 normal lumbosacral radiographs and 160 SBO lumbosacral radiographs. The performance of the models was evaluated by metrics such as accuracy, sensitivity, specificity, precision, F1 score, and area under the ROC curve (AUC) results. Results: In the detection of SBO, 85.5%, 80.8%, 89.7%, 87.5%, 84%, and 0.92 accuracy, sensitivity, specificity, precision, F1 score, and AUC results were obtained with the pre-trained VGG-19 model, respectively. The pre-trained VGG-19 model performed better than the others. Conclusion: Successful results were obtained in this study performed to the diagnosis of SBO with deep learning methods. A model that will assist physicians in the diagnosis of SBO can be developed with new studies to be conducted with a large number of spinal radiographs. © 2023, The Author(s), under exclusive licence to The Brazilian Society of Biomedical Engineering.Conference Object Citation - WoS: 9Citation - Scopus: 16Perlin Random Erasing for Data Augmentation(Ieee, 2021) Saran, Ayse Nurdan; Saran, Murat; Nar, FatihIn the last decade, Deep Learning is applied in a wide range of problems with tremendous success. Large data, increased computational resources, and theoretical improvements are main reasons for this success. As the dataset grows, the real-world is better represented, allows developing a model that can generalize. However, creating a labeled dataset is expensive, time-consuming, or sometimes even challenging. Therefore, researchers proposed data augmentation methods to increase dataset size by creating variations of the existing data. This study proposes an extension to Random Erasing data augmentation method by introducing smoothness. The proposed method provides better performance compared to Random Erasing data augmentation method, which is shown using a transfer learning scenario on the UC Merced Land-use image dataset.Conference Object Citation - WoS: 40Citation - Scopus: 77Malware Classification Using Deep Learning Methods(Assoc Computing Machinery, 2018) Dogdu, Erdogan; Cakir, BugraMalware, short for Malicious Software, is growing continuously in numbers and sophistication as our digital world continuous to grow. It is a very serious problem and many efforts are devoted to malware detection in today's cybersecurity world. Many machine learning algorithms are used for the automatic detection of malware in recent years. Most recently, deep learning is being used with better performance. Deep learning models are shown to work much better in the analysis of long sequences of system calls. In this paper a shallow deep learning-based feature extraction method (word2vec) is used for representing any given malware based on its opcodes. Gradient Boosting algorithm is used for the classification task. Then, k-fold cross-validation is used to validate the model performance without sacrificing a validation split. Evaluation results show up to 96% accuracy with limited sample data.Conference Object Citation - WoS: 7Phishing E-Mail Detection by Using Deep Learning Algorithms(Assoc Computing Machinery, 2018) Hassanpour, Reza; Dogdu, Erdogan; Choupani, Roya; Goker, Onur; Nazli, NazliArticle Citation - WoS: 65Citation - Scopus: 74Detection of Rheumatoid Arthritis From Hand Radiographs Using a Convolutional Neural Network(Springer London Ltd, 2020) Ureten, Kemal; Erbay, Hasan; Maras, Hadi HakanIntroduction Plain hand radiographs are the first-line and most commonly used imaging methods for diagnosis or differential diagnosis of rheumatoid arthritis (RA) and for monitoring disease activity. In this study, we used plain hand radiographs and tried to develop an automated diagnostic method using the convolutional neural networks to help physicians while diagnosing rheumatoid arthritis. Methods A convolutional neural network (CNN) is a deep learning method based on a multilayer neural network structure. The network was trained on a dataset containing 135 radiographs of the right hands, of which 61 were normal and 74 RA, and tested it on 45 radiographs, of which 20 were normal and 25 RA. Results The accuracy of the network was 73.33% and the error rate 0.0167. The sensitivity of the network was 0.6818; the specificity was 0.7826 and the precision 0.7500. Conclusion Using only pixel information on hand radiographs, a multi-layer CNN architecture with online data augmentation was designed. The performance metrics such as accuracy, error rate, sensitivity, specificity, and precision state shows that the network is promising in diagnosing rheumatoid arthritis.Conference Object Citation - WoS: 140Citation - Scopus: 214Intrusion Detection Using Big Data and Deep Learning Techniques(Assoc Computing Machinery, 2019) Dogdu, Erdogan; Faker, OsamaIn this paper, Big Data and Deep Learning Techniques are integrated to improve the performance of intrusion detection systems. Three classifiers are used to classify network traffic datasets, and these are Deep Feed-Forward Neural Network (DNN) and two ensemble techniques, Random Forest and Gradient Boosting Tree (GBT). To select the most relevant attributes from the datasets, we use a homogeneity metric to evaluate features. Two recently published datasets UNSW NB15 and CICIDS2017 are used to evaluate the proposed method. 5-fold cross validation is used in this work to evaluate the machine learning models. We implemented the method using the distributed computing environment Apache Spark, integrated with Keras Deep Learning Library to implement the deep learning technique while the ensemble techniques are implemented using Apache Spark Machine Learning Library. The results show a high accuracy with DNN for binary and multiclass classification on UNSW NB15 dataset with accuracies at 99.16% for binary classification and 97.01% for multiclass classification. While GBT classifier achieved the best accuracy for binary classification with the CICIDS2017 dataset at 99.99%, for multiclass classification DNN has the highest accuracy with 99.56%.