Bilgisayar Mühendisliği Bölümü Yayın Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12416/253
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Article Citation - WoS: 14Citation - Scopus: 18Existence Theory and Numerical Simulation of HIV-I Cure Model with New Fractional Derivative Possessing a Non-Singular Kernel(Springeropen, 2019) Aliyu, Aliyu Lsa; Alshomrani, Ali Saleh; Li, Yongjin; Inc, Mustafa; Baleanu, DumitruIn this research work, a mathematical model related to HIV-I cure infection therapy consisting of three populations is investigated from the fractional calculus viewpoint. Fractional version of the model under consideration has been proposed. The proposed model is examined by using the Atangana-Baleanu fractional operator in the Caputo sense (ABC). The theory of Picard-Lindelof has been employed to prove existence and uniqueness of the special solutions of the proposed fractional-order model. Further, it is also shown that the non-negative hyper-plane a positively invariant region for the underlying model. Finally, to analyze the results, some numerical simulations are carried out via a numerical technique recently devised for finding approximate solutions of fractional-order dynamical systems. Upon comparison of the numerical simulations, it has been demonstrated that the proposed fractional-order model is more accurate than its classical version. All the necessary computations have been performed using MATLAB R2018a with double precision arithmetic.Article Citation - WoS: 6Citation - Scopus: 6Auction-Based Serious Game for Bug Tracking(Wiley, 2019) Usfekes, Cagdas; Tuzun, Eray; Yilmaz, Murat; Macit, Yagup; Clarke, PaulToday, one of the challenges in software engineering is utilising application lifecycle management (ALM) tools effectively in software development. In particular, it is hard for software developers to engage with the work items that are appointed to themselves in these ALM tools. In this study, the authors have focused on bug tracking in ALM where one of the most important metrics is mean time to resolution that is the average time to fix a reported bug. To improve this metric, they developed a serious game application based on an auction-based reward mechanism. The ultimate aim of this approach is to create an incentive structure for software practitioners to find and resolved bugs that are auctioned where participants are encouraged to solve and test more bugs in less time and improve quality of software development in a competitive environment. They conduct hypothesis tests by performing a Monte Carlo simulation. The preliminary results of this research support the idea that using a gamification approach for an issue tracking system enhances the productivity and decreases mean time to resolution.Article Citation - WoS: 2Citation - Scopus: 4On Time-Memory Trade-Offs for Password Hashing Schemes(Frontiers Media Sa, 2024) Saran, Ayse NurdanA password hashing algorithm is a cryptographic method that transforms passwords into a secure and irreversible format. It is used not only for authentication purposes but also for key derivation mechanisms. The primary purpose of password hashing is to enhance the security of user credentials by preventing the exposure of plaintext passwords in the event of a data breach. As a key derivation function, password hashing aims to derive secret keys from a master key, password, or passphrase using a pseudorandom function. This review focuses on the design and analysis of time-memory trade-off (TMTO) attacks on recent password hashing algorithms. This review presents a comprehensive survey of TMTO attacks and recent studies on password hashing for authentication by examining the literature. The study provides valuable insights and strategies for safely navigating transitions, emphasizing the importance of a systematic approach and thorough testing to mitigate risk. The purpose of this paper is to provide guidance to developers and administrators on how to update cryptographic practices in response to evolving security standards and threats.Article Citation - WoS: 18Citation - Scopus: 27Application of Bilstm-Crf Model With Different Embeddings for Product Name Extraction in Unstructured Turkish Text(Springer London Ltd, 2024) Arslan, SerdarNamed entity recognition (NER) plays a pivotal role in Natural Language Processing by identifying and classifying entities within textual data. While NER methodologies have seen significant advancements, driven by pretrained word embeddings and deep neural networks, the majority of these studies have focused on text with well-defined grammar and structure. A significant research gap exists concerning NER in informal or unstructured text, where traditional grammar rules and sentence structure are absent. This research addresses this crucial gap by focusing on the detection of product names within unstructured Turkish text. To accomplish this, we propose a deep learning-based NER model which combines a Bidirectional Long Short-Term Memory (BiLSTM) architecture with a Conditional Random Field (CRF) layer, further enhanced by FastText embeddings. To comprehensively evaluate and compare our model's performance, we explore different embedding approaches, including Word2Vec and Glove, in conjunction with the Bidirectional Long Short-Term Memory and Conditional Random Field (BiLSTM-CRF) model. Furthermore, we conduct comparisons against BERT to assess the efficacy of our approach. Our experimentation utilizes a Turkish e-commerce dataset gathered from the internet, where traditional grammatical and structural rules may not apply. The BiLSTM-CRF model with FastText embeddings achieved an F1 score value of 57.40%, a precision value of 55.78%, and a recall value of 59.12%. These results indicate promising performance in outperforming other baseline techniques. This research contributes to the field of NER by addressing the unique challenges posed by unstructured Turkish text and opens avenues for improved entity recognition in informal language settings, with potential applications across various domains.Article Citation - WoS: 5Citation - Scopus: 11A Shallow 3d Convolutional Neural Network for Violence Detection in Videos(Cairo Univ, Fac Computers & information, 2024) Kaya, Aydin; Sever, Hayri; Dundar, Naz; Keceli, Ali SeydiWith the recent worldwide statistical rise in the amount of public violence, automated violence detection in surveillance cameras has become a matter of high importance. This work introduces an end-to-end, trainable 3D Convolutional Neural Network (3D CNN) for detecting violence in video footage. The proposed network is inherently capable of processing both spatial and temporal information, thereby obviating the need for additional models that would introduce higher computational requirements and complexity. This work has two main contributions: 1) developing a lightweight 3D CNN suitable for inference on edge devices as mobile systems, and 2) a comprehensive explanation of all components comprising a CNN model, thereby enhances model interpretability. Experiments were conducted to assess the performance of the proposed model using a consolidated dataset combining four benchmark datasets. The results of the experiments support the asserted contributions, which are discussed in detail.Article Citation - WoS: 1Using Text Mining for Research Trends in Empirical Software Engineering(Gazi Univ, 2021) Tokdemir, GulThis paper intends to examine the research trends in Empirical Software Engineering domain within the last two decades using text mining. It studies published articles in the relevant literature with an emphasis on abstracts of 10658 articles published in the literature on Experimental Software Engineering domain. Using a probabilistic topic modelling technique (Latent Dirichlet Allocation), it brings forward the main topics of research within this domain. By further analysis, the paper evaluates the changes of focus in published works in the last two decades and depicts the recent trends in research content wise. Through a timely comparison, it portrays the alteration of interest within empirical software engineering research and proposes a future research agenda to develop an advanced field, beneficial both for academics and practitioners.Article Citation - WoS: 19Citation - Scopus: 27Software Professionals During the Covid-19 Pandemic in Turkey: Factors Affecting Their Mental Well-Being and Work Engagement in the Home-Based Work Setting(Elsevier Science inc, 2022) Tokdemir, GulWith the COVID-19 pandemic, strict measures have been taken to slow down the spread of the virus, and consequently, software professionals have been forced to work from home. However, home based working entails many challenges, as the home environment is shared by the whole family simultaneously under pandemic conditions. The aim of this study is to explore software professionals' mental well-being and work engagement and the relationships of these variables with job strain and resource-related factors in the forced home-based work setting during the COVID-19 pandemic. An online cross-sectional survey based on primarily well-known, validated scales was conducted with software professionals in Turkey. The analysis of the results was performed through hierarchical multivariate regression. The results suggest that despite the negative effect of job strain, the resource related protective factors, namely, sleep quality, decision latitude, work-life balance, exercise predict mental well-being. Additionally, work engagement is predicted by job strain, sleep quality, and decision latitude. The results of the study will provide valuable insights to management of the software companies and professionals about the precautions that can be taken to have a better home-based working experience such as allowing greater autonomy and enhancing the quality of sleep and hence mitigating the negative effects of pandemic emergency situations on software professionals' mental well-being and work engagement. (C)& nbsp;2022 Elsevier Inc. All rights reserved.Article Citation - WoS: 11Citation - Scopus: 12Diagnosis of Osteoarthritic Changes, Loss of Cervical Lordosis, and Disc Space Narrowing on Cervical Radiographs With Deep Learning Methods(Turkish Joint Diseases Foundation, 2022) Tokdemir, Gul; Ureten, Kemal; Atalar, Ebru; Duran, Semra; Maras, Hakan; Maras, YukselObjectives: In this study, we aimed to differentiate normal cervical graphs and graphs of diseases that cause mechanical neck pain by using deep convolutional neural networks (DCNN) technology. Materials and methods: In this retrospective study, the convolutional neural networks were used and transfer learning method was applied with the pre-trained VGG-16, VGG-19, Resnet-101, and DenseNet-201 networks. Our data set consisted of 161 normal lateral cervical radiographs and 170 lateral cervical radiographs with osteoarthritis and cervical degenerative disc disease. Results: We compared the performances of the classification models in terms of performance metrics such as accuracy,Article Citation - WoS: 10Citation - Scopus: 14A Pairwise Deep Ranking Model for Relative Assessment of Parkinson's Disease Patients From Gait Signals(Ieee-inst Electrical Electronics Engineers inc, 2022) Ogul, Burcin Buket; Ozdemir, SuatContinuous monitoring of the symptoms is crucial to improve the quality of life for patients with Parkinson's Disease (PD). Thus, it is necessary to objectively assess the PD symptoms. Since manual assessment is subjective and prone to misinterpretation, computer-aided methods that use sensory measurements have recently been used to make objective PD assessment. Current methods follow an absolute assessment strategy, where the symptoms are classified into known categories or quantified with exact values. These methods are usually difficult to generalize and considered to be unreliable in practice. In this paper, we formulate the PD assessment problem as a relative assessment of one patient compared to another. For this assessment, we propose a new approach to the comparative analysis of gait signals obtained via foot-worn sensors. We introduce a novel pairwise deep-ranking model that is fed by data from a pair of patients, where the data is obtained from multiple ground reaction force sensors. The proposed model, called Ranking by Siamese Recurrent Network with Attention, takes two multivariate time-series as inputs and produces a probability of the first signal having a higher continuous attribute than the second one. In ten-fold cross-validation, the accuracy of pairwise ranking predictions can reach up to 82% with an AUROC of 0.89. The model outperforms the previous methods for PD monitoring when run in the same experimental setup. To the best of our knowledge, this is the first study that attempts to relatively assess PD patients using a pairwise ranking measure on sensory data. The model can serve as a complementary model to computer-aided prognosis tools by monitoring the progress of the patient during the applied treatment.Article Citation - WoS: 41Citation - Scopus: 56Automated Classification of Rheumatoid Arthritis, Osteoarthritis, and Normal Hand Radiographs With Deep Learning Methods(Springer, 2022) Maras, Hadi Hakan; Ureten, KemalRheumatoid arthritis and hand osteoarthritis are two different arthritis that causes pain, function limitation, and permanent joint damage in the hands. Plain hand radiographs are the most commonly used imaging methods for the diagnosis, differential diagnosis, and monitoring of rheumatoid arthritis and osteoarthritis. In this retrospective study, the You Only Look Once (YOLO) algorithm was used to obtain hand images from original radiographs without data loss, and classification was made by applying transfer learning with a pre-trained VGG-16 network. The data augmentation method was applied during training. The results of the study were evaluated with performance metrics such as accuracy, sensitivity, specificity, and precision calculated from the confusion matrix, and AUC (area under the ROC curve) calculated from ROC (receiver operating characteristic) curve. In the classification of rheumatoid arthritis and normal hand radiographs, 90.7%, 92.6%, 88.7%, 89.3%, and 0.97 accuracy, sensitivity, specificity, precision, and AUC results, respectively, and in the classification of osteoarthritis and normal hand radiographs, 90.8%, 91.4%, 90.2%, 91.4%, and 0.96 accuracy, sensitivity, specificity, precision, and AUC results were obtained, respectively. In the classification of rheumatoid arthritis, osteoarthritis, and normal hand radiographs, an 80.6% accuracy result was obtained. In this study, to develop an end-to-end computerized method, the YOLOv4 algorithm was used for object detection, and a pre-trained VGG-16 network was used for the classification of hand radiographs. This computer-aided diagnosis method can assist clinicians in interpreting hand radiographs, especially in rheumatoid arthritis and osteoarthritis.