PubMed İndeksli Yayınlar Koleksiyonu

Permanent URI for this collectionhttps://hdl.handle.net/20.500.12416/8650

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Adaptive Optics Applied To the Scintillation Index in Tissues
(Optica Publishing Group, 2025) Baykal, Yahya
Mitigation of the scintillation index of a collimated Gaussian beam, occurring in a turbulent tissue, is investigated by applying adaptive optics. Tilt and astigmatism types of adaptive optics corrections are applied, and the reduction in the tissue scintillations, referenced to no adaptive optics (No AO) scintillations, is reported for tilt only (T Only), astigmatism only (A Only), and total (T + A) adaptive optics correction. Reduction in the scintillations is analyzed against the tissue length, Gaussian laser beam source size, wavelength, receiver aperture diameter, and the tissue turbulence parameters, which are the strength coefficient of the refractive-index fluctuations, fractal dimension, characteristic length of heterogeneity, and small length-scale factor. Finally, the adaptive optics effect on the scintillations is reported for some specific tissue types of liver parenchyma (mouse), intestinal epithelium (mouse), and upper dermis (human). (c) 2025 Optica Publishing Group. All rights, including for text and data mining (TDM), Artificial Intelligence (AI) training, and similar technologies, are reserved.
Citation - WoS: 10
Citation - Scopus: 13
Adaptive Optics Corrections of Scintillations of Hermite-Gaussian Modes in an Oceanic Medium
(Optical Soc Amer, 2020) Baykal, Yahya
Adaptive optics correction of the scintillation index is found when Hermite-Gaussian laser beams are used in oceanic turbulence. Adaptive optics filter functions are used to find how the tilt, focus, astigmatism, coma, and total correction will behave under high order mode excitation. Reduction of the oceanic scintillation under various oceanic turbulence and system parameters is examined under different high order modes. Also, the effects of the source size, wavelength, and link length on the total adaptive optics correction of Hermite-Gaussian modes in an oceanic medium are investigated for different modes. (C) 2020 Optical Society of America
Citation - WoS: 2
Citation - Scopus: 3
Age-Related Decline in Source and Associative Memory
(Springer Heidelberg, 2025) Sumer, Erdi; Kaynak, Hande
This review explores the multifaceted nature of age-related decline in source memory and associative memory. The review highlights the potential effects of age-related decline in these types of memory. By integrating insights from behavioral, cognitive, and neuroscientific research, it examines how encoding, retrieval, and neural mechanisms influence this decline. Understanding these processes is critical to alleviate memory decline in older adults. Directing attention to source information during encoding, employing unitization techniques to strengthen memory associations, and utilizing metacognitive strategies to focus on relevant details show promise in enhancing memory retrieval for older adults. However, the review acknowledges limitations in processing resources and executive function, necessitating a nuanced approach to the complexities of age-related decline. In conclusion, this review underscores the importance of understanding the complexities of age-related source and associative memory decline and the potential benefits of specific cognitive strategies. It emphasizes the need for continued research on age-related memory function to improve the quality of life for aging populations.
Citation - WoS: 22
Citation - Scopus: 23
Alternative Interpretation of the Edge-Diffraction Phenomenon
(Optical Soc Amer, 2008) Umul, Yusuf Z.
An alternative interpretation of the phenomenon of edge diffraction is proposed according to a new separation of the Fresnel function. The subfields are investigated in the problem of diffraction of a plane wave by a perfectly conducting half-plane, and the results are compared numerically with other interpretations. (c) 2008 Optical Society of America.
Citation - WoS: 98
Citation - Scopus: 117
Anaerobic Digestion of Dairy Manure With Enhanced Ammonia Removal
(Academic Press Ltd- Elsevier Science Ltd, 2008) Uludag-Demirer, S.; Demirer, G. N.; Frear, C.; Chen, S.
Poor ammonia-nitrogen removal in methanogenic anaerobic reactors digesting animal manure has been reported as an important disadvantage of anaerobic digestion (AD) in several studies. Development of anaerobic processes that are capable of producing reduced ammonia-nitrogen levels in their effluent is one of the areas where further research must be pursued if AD technology is to be made more effective and economically advantageous. One approach to removing ammonia from anaerobically digested effluents is the forced precipitation of magnesium ammonium phosphate hexahydrate (MgNH4PO4-6H(2)O), commonly called struvite. Struvite is a valuable plant nutrient source for nitrogen and phosphorus since it releases them slowly and has non-burning features because of its low solubility in water. This study investigated coupling AD and controlled struvite precipitation in the same reactor to minimize the nitrogen removal costs and possibly increase the performance of the AD by reducing the ammonia concentration which has an adverse effect oil anaerobic bacteria. The results indicated that Lip to 19% extra COD and almost 11% extra NH3 removals were achieved relative to a control by adding 1750 mg/L of MgCl2-6H(2)O to the anaerobic reactor. (C) 2007 Elsevier Ltd. All rights reserved.
Citation - WoS: 37
Citation - Scopus: 44
Annular Beam Scintillations in Strong Turbulence
(Optical Soc Amer, 2010) Gercekcioglu, Hamza; Baykal, Yahya; Nakiboglu, Cem
A scintillation index formulation for annular beams in strong turbulence is developed that is also valid in moderate and weak turbulence. In our derivation, a modified Rytov solution is employed to obtain the small-scale and large-scale scintillation indices of annular beams by utilizing the amplitude spatial filtering of the atmospheric spectrum. Our solution yields only the on-axis scintillation index for the annular beam and correctly reduces to the existing strong turbulence results for the Gaussian beam-thus plane and spherical wave scintillation indices-and also correctly yields the existing weak turbulence annular beam scintillations. Compared to collimated Gaussian beam, plane, and spherical wave scintillations, collimated annular beams seem to be advantageous in the weak regime but lose this advantage in strongly turbulent atmosphere. It is observed that the contribution of annular beam scintillations comes mainly from the small-scale effects. At a fixed primary beam size, the scintillations of thinner collimated annular beams compared to thicker collimated annular beams are smaller in moderate turbulence but larger in strong turbulence; however, thinner annular beams of finite focal length have a smaller scintillation index than the thicker annular beams in strong turbulence. Decrease in the focal length decreases the annular beam scintillations in strong turbulence. Examining constant area annular beams, smaller primary sized annular structures have larger scintillations in moderate but smaller scintillations in strong turbulence. (C) 2010 Optical Society of America
Citation - WoS: 393
Citation - Scopus: 432
Anomalous Diffusion Expressed Through Fractional Order Differential Operators in the Bloch-Torrey Equation
(Academic Press inc Elsevier Science, 2008) Abdullah, Osama; Baleanu, Dumitru; Zhou, Xiaohong Joe; Magin, Richard L.
Diffusion weighted MRI is used clinically to detect and characterize neurodegenerative, malignant and ischemic diseases. The correlation between developing pathology and localized diffusion relies on d iffusi on -weighted pulse sequences to probe biophysical models of molecular diffusion-typically exp[-(bD)]-where D is the apparent diffusion coefficient (turn (2)/s) and b depends on the specific gradient pulse sequence parameters. Several recent studies have investigated the so-called anomalous diffusion stretched exponential model-exp[-(bD)(alpha)], where alpha is a measure of tissue complexity that can be derived from fractal models of tissue structure. In this paper we propose an alternative derivation for the stretched exponential model using fractional order space and time derivatives. First, we consider the case where the spatial Laplacian in the Bloch-Torrey equation is generalized to incorporate a fractional order Brownian model of diffusivity. Second, we consider the case where the time derivative in the Bloch-Torrey equation is replaced by a Riemann-Liouville fractional order time derivative expressed in the Caputo form. Both cases revert to the classical results for integer order operations. Fractional order dynamics derived for the first case were observed to fit the signal attenuation in diffusion-weighted images obtained from Sephadex gels, human articular cartilage and human brain. Future developments of this approach may be useful for classifying anomalous diffusion in tissues with developing pathology. (c) 2007 Elsevier Inc. All rights reserved.
Citation - WoS: 27
Citation - Scopus: 26
Aperture Averaging in Multiple-Input Single-Output Free-Space Optical Systems Using Partially Coherent Radial Array Beams
(Optical Soc Amer, 2016) Baykal, Yahya; Uysal, Murat; Gokce, Muhsin Caner
Multiple-input single-output (MISO) techniques are employed in free-space optical (FSO) links to mitigate the degrading effects of atmospheric turbulence. In this paper, for the MISO FSO system, a partially coherent radial array and a finite-sized receiver aperture are used at the transmitter and the receiver, respectively. Using the extended Huygens - Fresnel principle, we formulate the average power and the power correlation at the finite-sized slow detector in weak atmospheric turbulence. System performance indicators such as the power scintillation index and the aperture averaging factor are determined. Effects of the source size, ring radius, receiver aperture radius, link distance, and structure constant and the degree of source coherence are analyzed on the performance of the MISO FSO system. In the limiting cases, the numerical results are found to be the same when compared to the existing coherent and partially coherent Gaussian beam scintillation indices. (C) 2016 Optical Society of America
Citation - WoS: 7
Citation - Scopus: 8
Apertured Paraxial Bessel Beams
(Optical Soc Amer, 2010) Umul, Yusuf Z.
The paraxial Bessel beam is obtained by applying an approximation in the wavenumbers. The scattering of the beams by a circular aperture in an absorbing screen is investigated. The scattered fields are expressed in terms of the Fresnel integrals by evaluating the Kirchhoff diffraction integral in the paraxial approximation. The results are examined numerically. (C) 2010 Optical Society of America
Citation - WoS: 72
Citation - Scopus: 81
An Application of Derivative and Continuous Wavelet Transforms To the Overlapping Ratio Spectra for the Quantitative Multiresolution of a Ternary Mixture of Paracetamol, Acetylsalicylic Acid and Caffeine in Tablets
(Elsevier Science Bv, 2005) Özdemir, A; Baleanu, D; Dinç, E
Quantitative multi resolution of tablets and ternary mixtures of paracetamol (PAR), acetylsalicylic acid (ASP) and caffeine (CAF) having strongly overlapping spectra was accomplished by two graphical transform methods as ratio spectra first derivative-zero crossing and ratio spectra-continuous wavelet transform-zero crossing (ratio spectra CWT-zero crossing) methods. In this study, ratio spectra derivative-zero crossing and ratio spectra CWT-zero crossing methods are based on the use of transformed signals of the ratio spectra and their calibration graphs were obtained by measuring the dA/dlambda and CWT amplitudes of the ratio spectra corresponding to zero crossing points. For the comparison purpose. PLS calibration method was applied to predict the content of the same mixtures containing the subject active Compounds. The obtained calibrations were tested by using the synthetic mixtures and standard addition technique and they applied to the simultaneous determination of PAR, ASP and CAF in commercial pharmaceutical preparation. The obtained results were statistically compared with each other as well as those obtained by HPLC method and they showed good agreement. (C) 2004 Published by Elsevier B.V.
Citation - WoS: 56
Citation - Scopus: 56
Application of the Wavelet Method for the Simultaneous Quantitative Determination of Benazepril and Hydrochlorothiazide in Their Mixtures
(Aoac int, 2004) Baleanu, D; Dinç, E
The discrete and continuous wavelet transforms were applied to the overlapping signal analysis of the ratio data signal for simultaneous quantitative determination of the title subject compounds in samples. The ratio spectra data of the binary mixtures containing benazepril (BE) and hydrochlorothiazide (HCT) were transferred as data vectors into the wavelet domain. Signal compression, followed by a 1-dimension continuous wavelet transform (CWT), was used to obtain coincident transformed signals for pure BE and HCT and their mixtures. The coincident transformed amplitudes corresponding to both maximum and minimum points allowed construction of calibration graphs for each compound in the binary mixture. The validity of CWT calibrations was tested by analyzing synthetic mixtures of the investigated compounds, and successful results were obtained. All calculations were performed within EXCEL, C++, and MATLAB6.5 softwares. The obtained results indicated that our approach was flexible and applicable for the binary mixture analysis.
Citation - WoS: 1
Arbitrary Beam Propagation in an Underwater Turbulent Medium
(Optica Publishing Group, 2025) Turan, Mehmet Furkan; Arpali, Caglar; Baykal, Yahya
The average intensity for an arbitrary optical beam is obtained and presented by introducing propagation in underwater turbulence for arbitrary shaped optical beams that can be expressed by the known and newly generated source profiles. The received intensity of the arbitrary optical beam is found, and the effect of underwater turbulence on the received intensity is analyzed. The arbitrary source field profile is generated by dividing the source plane into pixels and by assigning the required amplitude and phase to each pixel. The average received intensity distributions are presented in the presence of underwater turbulence for different types of beams, such as the known Gaussian beam, arbitrary beams of chess board shape, and a beam consisting of the initial letters of our & Ccedil;ankaya & Uuml;niversitesi, & Ccedil;.& Uuml;. Our results can be used in applications such as underwater optical imaging systems, reflection from rough surfaces underwater, underwater wireless optical communication links, and underwater optical cryptography. (c) 2025 Optica Publishing Group. All rights, including for text and data mining (TDM), Artificial Intelligence (AI) training, and similar technologies, are reserved.
Citation - WoS: 1
Citation - Scopus: 2
Associated Factors of Psychological Symptoms Among Unemployed Turkish Adults: the Role of Personality Factors and Rumination
(Sage Publications inc, 2020) Tuna, Ezgi; Balci, Seyma
Unemployment has been associated with adverse mental health outcomes including depression and suicide. In the last decades, unemployment rates have increased substantially in Turkey; yet, factors and mechanisms that play a role in experiencing psychological symptoms among unemployed individuals are not well understood. The aim of this study was to investigate the role of personality characteristics on psychological symptoms among unemployed Turkish adults and to test the mediating role of rumination as a dysfunctional cognitive strategy. The sample consisted of 217 unemployed Turkish adults who completed self-report measures on neuroticism, external locus of control, rumination, and psychological symptoms. The results of the structural equation modeling indicated that rumination partially mediated the relationship between personality variables (i.e., neuroticism and external locus of control) and psychological symptoms, thus verifying the hypothesis of the study. The direct paths from trait neuroticism and external locus of control to psychological symptoms were also significant. Results revealed that a tendency to attribute future outcomes to external factors and an increased tendency to experience negative emotions are associated with engaging passively in rumination, which in turn predicts psychological symptoms. Interventions are suggested to focus on effective coping strategies along with increasing individuals' perceived control over life and future.
Citation - WoS: 26
Citation - Scopus: 31
Asymptotic Solutions of Fractional Interval Differential Equations With Nonsingular Kernel Derivative
(Amer inst Physics, 2019) Ahmadian, A.; Salimi, M.; Ferrara, M.; Baleanu, D.; Salahshour, S.
Realizing the behavior of the solution in the asymptotic situations is essential for repetitive applications in the control theory and modeling of the real-world systems. This study discusses a robust and definitive attitude to find the interval approximate asymptotic solutions of fractional differential equations (FDEs) with the Atangana-Baleanu (A-B) derivative. In fact, such critical tasks require to observe precisely the behavior of the noninterval case at first. In this regard, we initially shed light on the noninterval cases and analyze the behavior of the approximate asymptotic solutions, and then, we introduce the A-B derivative for FDEs under interval arithmetic and develop a new and reliable approximation approach for fractional interval differential equations with the interval A-B derivative to get the interval approximate asymptotic solutions. We exploit Laplace transforms to get the asymptotic approximate solution based on the interval asymptotic A-B fractional derivatives under interval arithmetic. The techniques developed here provide essential tools for finding interval approximation asymptotic solutions under interval fractional derivatives with nonsingular Mittag-Leffler kernels. Two cases arising in the real-world systems are modeled under interval notion and given to interpret the behavior of the interval approximate asymptotic solutions under different conditions as well as to validate this new approach. This study highlights the importance of the asymptotic solutions for FDEs regardless of interval or noninterval parameters. Published under license by AIP Publishing.
Citation - WoS: 127
Citation - Scopus: 135
Average Intensity and Spreading of Cosh-Gaussian Laser Beams in the Turbulent Atmosphere
(Optical Soc Amer, 2005) Eyyuboglu, HT; Baykal, Y
The average intensity and spreading of cosh-Gaussian laser beams in the turbulent atmosphere are examined. Our research is based principally on formulating the average-intensity profile at the receiver plane for cosh-Gaussian excitation. The limiting cases of our formulation for the average intensity are found to reduce correctly to the existing Gaussian beam wave result in turbulence and the cosh-Gaussian beam result in free space (in the absence of turbulence). The average intensity and the broadening of the cosh-Gaussian beam wave after it propagates in the turbulent atmosphere are numerically evaluated versus source size, beam displacement, link length, structure constant, and two wavelengths of 0.85 and 1.55 mum, which are most widely used in currently employed free-space-optical links. Results indicate that in turbulence the beam is widened beyond its free-space diffraction values. At the receiver plane, analogous to the case of free space, this diffraction eventually leads to transformation of the cosh-Gaussian beam into an oscillatory average-intensity profile with a Gaussian envelope. (C) 2005 Optical Society of America.
Citation - WoS: 4
Citation - Scopus: 4
Beam Diffraction by a Resistive Half-Plane
(Optical Soc Amer, 2015) Umul, Yusuf Ziya
The scattering of a Gaussian beam by a resistive half-screen is investigated. Far-field approximation is used in evaluation of geometrical optics and diffracted waves. The uniform expression of the diffracted waves by the resistive half-plane, which was found with the Sommerfeld-Maliuzhinets method, is obtained. The scattered fields for the case of the beam incidence are evaluated with the technique of a complex point source. The resultant wave expressions are examined numerically. (C) 2015 Optical Society of America
Beam Moments of Higher-Order Annular Gaussian Beams in Tissue Turbulence
(Optica Publishing Group, 2025) Arpali, Serap Altay; Arpali, Caglar; Baykal, Yahya
Beam moments of the laser beam at the receiver plane were analyzed using our previously developed formula for the average light intensity of a higher-order annular Gaussian (HOAG) beam in the presence of biological tissue turbulence. HOAG beam moments are examined for the entities of power-in-the-bucket (PIB) and kurtosis across various tissue types such as the upper dermis (human), liver parenchyma (mouse), intestinal epithelium (mouse), and deep dermis (mouse). Moreover, beam moments are explored considering factors like the strength coefficient of the refractive-index fluctuations and the propagation distance. The PIB values for all HOAG beam modes are found to decrease exponentially and steadily, behaving similar to Gaussian beams as tissue length increases. As turbulence intensity increases, higher-order HOAG beam modes transfer optical energy to the receiver more efficiently than the lower order modes. Kurtosis analysis shows that at intermediate distances, the beam energy is distributed toward the edges, while at longer distances, the energy concentration is lower at the edges than at the center. This trend is reflected in increasing kurtosis values across all HOAG modes and tissue types. Considering the changes in PIB and kurtosis, higher-order HOAG modes transfer energy more conservatively within the tissue. Furthermore, the tissue type with the best transfer of optical power was observed to be the deep dermis (mouse). (c) 2025 Optica Publishing Group. All rights, including for text and data mining (TDM), Artificial Intelligence (AI) training, and similar technologies, are reserved.
Beam Shaping on a Fluorescent On-Chip Imaging System
(IOP Publishing Ltd, 2026) Arpali, Caglar; Arpali, Serap Altay
The fluorescent on-chip imaging system differs from a conventional fluorescent microscope in terms of the imaging method because the sample is directly placed on the imaging sensor (i.e., charge-coupled device (CCD)). While this imaging modality presents several advantages, including a wide field of view and rapid scanning speed, it can be difficult to detect certain particles in dense and scattering environments, such as whole blood and tissue. These difficulties lead to a decreased signal-to-noise ratio (SNR) in the captured images, influenced by both the medium's light-transmitting capability and the excitation techniques used. In this paper, we quantitatively examine the effect of beam shaping techniques on a fluorescent on-chip imaging system from the SNR perspective. An experimental comparison is conducted between a Gaussian beam and plane-wave illumination generated by a novel phase modulation schema using our developed imaging platform. The results indicate that the Gaussian beam produces higher SNR images than plane waves when detecting fluorescent particles in a microchannel. Gaussian beam's higher energy confinement ability enhances the image quality of on-chip fluorescent imaging systems, particularly involving scattering-like medium limitations.
Citation - WoS: 11
Citation - Scopus: 12
Bit Error Rate Analysis of Gaussian, Annular Gaussian, Cos Gaussian, and Cosh Gaussian Beams With the Help of Random Phase Screens
(Optical Soc Amer, 2014) Eyyuboglu, Halil T.; Eyyuboʇlu, Halil T.
Using the random phase screen approach, we carry out a simulation analysis of the probability of error performance of Gaussian, annular Gaussian, cos Gaussian, and cosh Gaussian beams. In our scenario, these beams are intensity-modulated by the randomly generated binary symbols of an electrical message signal and then launched from the transmitter plane in equal powers. They propagate through a turbulent atmosphere modeled by a series of random phase screens. Upon arriving at the receiver plane, detection is performed in a circuitry consisting of a pin photodiode and a matched filter. The symbols detected are compared with the transmitted ones, errors are counted, and from there the probability of error is evaluated numerically. Within the range of source and propagation parameters tested, the lowest probability of error is obtained for the annular Gaussian beam. Our investigation reveals that there is hardly any difference between the aperture-averaged scintillations of the beams used, and the distinctive advantage of the annular Gaussian beam lies in the fact that the receiver aperture captures the maximum amount of power when this particular beam is launched from the transmitter plane. (C) 2014 Optical Society of America
Citation - WoS: 30
Citation - Scopus: 32
Bit Error Rate of Pulse Position Modulated Optical Wireless Communication Links in Oceanic Turbulence
(Optical Soc Amer, 2018) Baykal, Yahya
The upper bound of the average bit error rate (BER) of a pulse position modulated (PPM) optical wireless communication (OWC) link operating in oceanic turbulence is formulated. BER variations against the changes in the ratio of temperature to salinity contributions to the refractive index spectrum, the rate of dissipation of mean-squared temperature, and the rate of dissipation of kinetic energy per unit mass of fluid are found at various data bit rates, average current gains of the avalanche photodiode (APD), and M values of the M-ary PPM. It is found that under any oceanic turbulence parameters, BER performance of the PPM OWC system becomes favorable at smaller data bit rates, M values, and at larger average current gains of APD. (c) 2018 Optical Society of America

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